Resources. Our favourite links

In this section we share our collection of the most popular links that are used almost daily by investigators of our group. Links to different databases, bioinformatic tools and catalogs of reagents, sorted by their manufacturers, and scientific journals - you can find them all posted here.

Databases

UCSC Genome Browser
Ensembl Genome Browser
ArrayExpress Archive
RCSB Protein Data Bank
UniProt
ASTD 1.1
DART
GeneCards V3

Schistosoma mansoni
Genome Project


Tools for data analysis

Galaxy
The Genomic HyperBrowser


Cell banks

ATCC
DSMZ
CLS
Rio de Janeiro Cell Bank

Computational tools

Reverse Complement
ClustalW2
ExPASy Translate Tool
RNAfold webserver
RNAz webserver
DARNED
Poland
polyadq

NEBcutter V2.0
Primer3
MethPrimer
IDT OligoAnalyzer
OligoPerfect™ Designer
BLOCK-iT™ RNAi Designer

QUMA
CpG Island Searcher
Promoter 2.0
PROMO
NNPP

ESEfinder 3.0
RESCUE-ESE
ACESCAN2

NCBI tools

PubMed
BLAST
Primer-BLAST
AceView

NCBI DCODE.org

Search NCBI databases
List of all NCBI resources

NCBI Handbook Glossary
MeSH


Lists of other tools

Zhang's Lab: Software
Zhang's Lab: Useful links
CBS Prediction Servers
Softberry
Mobyle@pasteur
Molbiol-tools.ca

A-C

Abcam
ABgene
Affinity BioReagents
Applied Biosystems
Axygen Biosciences
Beckman Coulter
Bio-Rad Laboratories
Cayman Chemical
Clontech Laboratories
Corning Life Sciences

E-N

EPICENTRE
Eppendorf
Fermentas Life Sciences
Fisher Scientific
Illumina
Invitrogen
Merck Chemicals
Millipore
NALGENE Labware
New England Biolabs

O-Z

OriGene
PerkinElmer Life Science
Promega
R&D Systems
Roche
Santa Cruz Biotechnology
SERVA Electrophoresis
Sigma-Aldrich
QIAGEN
Vitrocell Embriolife
454 Life Sciences (Roche)

Popular journals

Nature
Nature Biotechnology
Nature Reviews
Oncogene
Science
PNAS
Cell
RNA
BMC Genomics
Genes & Development
Genome Research
Genome Biology
PLoS ONE
PLoS Genetics
Human Molecular Genetics
JBC

Publishers

Nature Publishing Group
Oxford University Press
HighWire Press
CSHL Press
Springer (Life Sciences)
Elsevier (Life Sciences)
PLoS


Other links

ISI web of knowledge
Google Scholar
CrossRef

COSEAS-USP

Internal use

Local UCSC custom tracks
Local UCSC Genome Browser
Lab wiki