Instituto de Química
USP, CATG, FAPESP Universidade de São Paulo CATG - Center for Advanced Technologies in Genomics FAPESP

Resources. Our favourite links

In this section we share our collection of the most popular links that are used almost daily by researchers of our group. Links to different databases, bioinformatic tools and catalogs of reagents, sorted by their manufacturers, and scientific journals - you can find them all posted here.

Research tools for every day

Databases

UCSC Genome Browser
Ensembl Genome Browser
ArrayExpress Archive
SRA Database
RCSB Protein Data Bank
UniProt
GeneCards V3

JASPAR Database
RBPDB
DART

Schistosoma mansoni
Genome Project



Tools for data analysis

Galaxy
The Genomic HyperBrowser


Cell banks

ATCC
DSMZ
CLS
Rio de Janeiro Cell Bank



Computational tools

Reverse Complement
ClustalW2
ExPASy Translate Tool
RNAfold webserver
RNAz webserver
catRAPID
Poland

NEBcutter V2.0
Primer3
IDT OligoAnalyzer
IDT AntiSense Design
BLOCK-iT™ RNAi Designer
Optimized CRISPR Design

QUMA
MethPrimer
CpG Island Searcher

Promoter 2.0
PROMO

CPC
CPAT
ORF Finder

HCpolya

NCBI tools

PubMed
BLAST
Primer-BLAST
AceView

NCBI DCODE.org

List of all NCBI resources

NCBI Handbook Glossary
MeSH


Lists of other tools

Genome Engineering Tools
Zhang's Lab: Software
Zhang's Lab: Useful links
CBS Prediction Servers
Softberry
Mobyle@pasteur
Molbiol-tools.ca





Catalogs of reagents

A-C

Abcam
ABgene
Affinity BioReagents
Applied Biosystems
Axygen Biosciences
Beckman Coulter
Bio-Rad Laboratories
Cayman Chemical
Clontech Laboratories
Corning Life Sciences




E-N

EPICENTRE
Eppendorf
Exxtend
Fermentas Life Sciences
Fisher Scientific
Illumina
Invitrogen
Merck Chemicals
Millipore
NALGENE Labware
New England Biolabs



O-Z

OriGene
PerkinElmer Life Science
Promega
R&D Systems
Roche
Santa Cruz Biotechnology
SERVA Electrophoresis
Sigma-Aldrich
QIAGEN
Vitrocell Embriolife
454 Life Sciences (Roche)



Scientific journals and related links

Popular journals

Nature
Nature Reviews
Science
Cell
PNAS
RNA
Nucleic Acids Research
BMC Genomics
Genes & Development
Genome Research
Genome Biology
PLoS Genetics
JBC
PLOS NTD

Publishers

Nature Publishing Group
Oxford University Press
HighWire Press
CSHL Press
Springer (Life Sciences)
Elsevier (Life Sciences)
PLoS


Other links

ISI web of knowledge
Google Scholar
CrossRef

Internal use

Local UCSC custom tracks
Local UCSC Genome Browser
Lab wiki