PUBLICAÇÕES/ PUBLICATIONS

 

32) Vilella-Arias, S.A. ; Rocha, R.M. ; Costa, W.H. ; Zequi, S.C. ; Guimarães, G.S. ; Verjovski-Almeida, S ; Soares, F.A. ; Reis E.M. (2013). "Loss of Caspase 7 expression is associated with poor prognosis in renal cell carcinoma clear cell subtype". Urology, 82: 974.e1–974.e7.

31) Beckedorff F.C., Ayupe A.C., Crocci-Souza R., Amaral M.S., Nakaya H. I.,. F., Soltys D.T, Menck C.F.M., Reis E. M., Verjovski-Almeida S. (2013). "The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, reducing the expression of RASSF1A and increasing cell proliferation". PLOS Genetics, 9: e1003705.

30) Gras. D.E., Persinoti, G.F., Peres, N.T.A., Martinez-Rossi, N.M., Tahira, AC., Reis, E.M., Prade, R.A.; Rossi. A. (2013). "Transcriptional profiling of Neurospora crassa Δmak-2 reveals that mitogen-activated protein kinase MAK-2 participates in the phosphate signaling pathway". Fungal Genetics and Biology, in Press.

29) Reis E.M., Verjovski-Almeida S. (2012) Perspectives of Long Non-Coding RNAs in Cancer Diagnostics. Frontiers in Genetics, 3:1-8.

28) Tahira A.C., Kubrusly M.S., Faria M.F., Dazzani B., Fonseca R.S., Maracaja-Coutinho V., Verjovski-Almeida S., Machado M.C., Reis E.M. (2011). "Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer". Molecular Cancer,10:141.

27) Chudzinski-Tavassi, A.M., De-Sa-Junior, L., Simons, S.M., Maria, D.A., Ventura, J.S., Batista, I.F.C., Faria, F., Duraes, E.O., Reis, E.M., Demasi, M. (2010). " A new tick Kunitz type inhibitor, Amblyomin-X, induces tumor cell death by modulating genes related to the cell cycle and targeting the ubiquitin-proteasome system". Toxicon, 56:1145–1154

26) Ferrari M.F.R., Reis E.M.,  Matsumoto J.P.P.Fior-Chadi D.R. (2010). "Transcriptome analysis of nicotine-exposed cells from the brainstem of neonate spontaneously hypertensive and Wistar Kyoto rats", The Pharmacogenomics Journal, 10, 134-160.

25) Colombo J., Fachel A.A., Calmon M.F., Cury P.M., Fukuyama E.E., Tajara E.H., Cordeiro J.A., Verjovski-Almeida, S., Reis E.M., Rahal P. (2009). "Gene expression profiling reveals molecular marker candidates of laryngeal squamous cell carcinoma". Oncology Reports, 21:649-63.

24) Ferrari M.F.R., Reis E.M.,  Matsumoto J.P.P.Fior-Chadi D.R. (2009). "Gene expression profiling of cultured cells from brainstem of newborn spontaneously hypertensive and Wistar Kyoto rats", Cellular and Molecular Neurobiology, 29:287-308.

23) Brito G.C.,  Fachel A. A., Vettore A. L., Vignal G.M., Gimba E., Campos F.S., Barcinski M.A., Verjovski-Almeida S., Reis E.M. (2008) “Identification of protein-coding and intronic noncoding RNAs downregulated in clear cell renal carcinoma”, Molecular carcinogenesis, 47:757-67.

22) Louro R., El-Jundi T., Nakaya H.I., Reis E.M., Verjovski-Almeida S. (2008). “Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci.”, Genomics, 92:18-25.

21) Igreja C., Caiado F., Clode N., Henriques A., Camargo L., Reis E.M., Dias, S. (2008). “Detailed molecular characterization of cord blood derived endothelial progenitors”. Experimental Hematology, 36:193-203.

20) Nakaya H. I., Beckedorff F. C. F., Baldini M. L., Fachel A. A., Reis E. M., Verjovski-Almeida S. (2007). “Splice variants of TLE family genes and up-regulation of a TLE3 isoform in prostate tumors”. Biochemical and Biophysical Research Communications, 364:918-923,

19) Fanganiello, R. D. ; Sertie, A. L. ; Reis, E.M. ; Yeh, E. ; Oliveira, N. ; Bueno, D. F. ; Kerkis, I. ; Alonso, N. ; Cavalheiro, S. ; Matsushita, H. ; Verjovski-Almeida, Sergio ; Bueno, M. R. P. (2007). “Apert p.Ser252Trp mutation in FGFR2 alters osteogenic potential and gene expression of cranial periosteal cells”. Molecular Medicine, 13:422-42.

18) Nakaya H.I., Amaral P.P., Louro R., Lopes A., Fachel A.A., Moreira Y.B., El-Jundi T.A., da Silva A.M., Reis E.M. and Verjovski-Almeida S. (2007). “Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription”. Genome Biology, 8:R43.

17) Louro R., Nakaya H.T., Amaral P.P., Festa F., Sogayar M.C., da Silva A.M. and Verjovski-Almeida and Reis E.M. (2007) “Androgen responsive intronic non-coding RNAs”,  BMC Biology, 5:4.

16) Peixoto B.R., Vêncio R.Z.N., Egidio C.,  Mota-Vieira L., Verjovski-Almeida S. and Reis E.M. (2006) “Evaluation of reference-based two-color methods for measurement of gene expression ratios using spotted cDNA microarrays”, BMC Genomics, 7:35.

15) Pontes E.R., Matos L.C., da Silva E.A., Xavier, L.S., Diaz B.L., Small I.A., Reis E.M., Verjovski-Almeida S., Barcinski M.A. and Gimba E.R.P. (2006)  “Auto-antibodies in Prostate Cancer: Humoral immune response to antigenic determinants coded by the differentially expressed transcripts FLJ23438 and VAMP3”, The Prostate, 66: 1463-1473.

14) E.M. Reis, E. Ojopi, F. Alberto, P. Rahal, F. Tsukumo, U. Mancini, G. Guimarães, G. Thompson, C. Camacho, E. Miracca, A. Carvalho, A. Machado, A. Paquola, J. Cerutti, A.M. da Silva, G. Pereira, S. Valentini, M. Nagai, L. Kowalski, S. Verjovski-Almeida, E. Tajara, E. Dias-Neto and the Head and Neck Annotation Consortium. (2005) "Large-scale transcriptome analyses reveal new genetic marker candidates of head, neck and thyroid cancer", Cancer Research, 65: 1693-1699.

13) Reis E.M.,Louro R., Nakaya H.I. and Verjovski-Almeida S. (2005) "AS AntiSense RNA gets intronic", OMICS, 9: 2–12.

12)  Brentani R.R., Carraro D.M., Verjovski-Almeida S., Reis E.M., Neves E.J.,  de Souza S.J., Carvalho A.F., Brentani H. and Reis L.F.L. (2005) "Gene expression arrays in Cancer Research: Methods and Applications", Critical Reviews in Oncology/Hematology, 54: 95-105.

11) Reis E.M., Nakaya H.I., Louro R., Canavez F.C., Flatschart A.V.F., Almeida G.T., Egidio C.M., Paquola A., Machado A.A., Festa F., Yamamoto D., Alvarenga R., da Silva C.C., Brito G.C.,  Simon S., Moreira-Filho C.A., Leite, K.R., Camara-Lopes L.H., Campos F.S., Gimba E., Vignal G.M., El-Dorry H., Sogayar M.C., Barcinski M.A., da Silva A.M. and Verjovski-Almeida S. (2004) “Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer”, Oncogene, 23: 6684–6692.

10) Louro R., Nakaya H.T., Paquola A., Martins E.A.L., da Silva A.M., Verjovski-Almeida S. and Reis E.M. (2004) RASL11A, member of a novel small monomeric GTPase gene family, is differentially expressed in prostate tumors”, Biochem. Biophys. Res. Commun., 316: 618-627.
9) Verjovski-Almeida S., De Marco R., Martins E.A.L., Guimarães P.E.M., Ojopi E.P.B., Paquola A.C.M., Piazza J.P., Nishiyama Jr M.Y., Kitajima J.P., Adamson R.E., Ashton P.D., Bonaldo M.F., Coulson P.S., Dillon G.P., Farias L.P., Gregorio S.P., Ho P.L., Leite R.A., Malaquias L.C.C., Marques R.C.P., Miyasato P.A., Nascimento A.L.T.O., Ohlweiler F.P., Reis E.M., Ribeiro M.A., Sá R.G., Stukart G.C., Bento-Soares M., Gargioni C., Kawano T., Rodrigues V., Madeira A.M.B.N., Wilson R.A., Menck C.E.F., Setubal J.C., Leite L.C.C., Dias-Neto E. (2003) “Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni”, Nature Genetics, 35:148-157.

8) Brentani H., Caballero O.L., Camargo A.A, da Silva A.M., da Silva Junior W.A., Dias-Neto E., Grivet M., Gruber A., Guimaraes P.E.M., Hide W., Iseli C., Jongeneel V., Kelso J., Nagai M.A., Ojopi E.P.B., Osorio E.C., Reis E.M.R., Riggins G.J., Simpson A.J.G., de Souza S., Stevenson B.J., Strausberg R.L., Tajara E.H., Verjovski-Almeida S., The HCGP/CGAP Annotation Consortium and The HCGP Sequencing Consortium (2003) “The Generation and Utilization of a Cancer Oriented Representation of the Human Transcriptome, Using Expressed Sequence Tags”, Proc. Natl. Acad. Sci. USA, 100:13418-13423.

7) Paquola A. C. M., Nishyiama Jr. M. Y., Reis E. M., da Silva A. M. and Verjovski-Almeida S. (2003) "ESTWeb: web-based bioinformatics services for EST sequencing projects". Bioinformatics, 19:1587-1588.

6) Paquola A. C. M., Machado A. A., Reis E. M., da Silva A. M. and Verjovski-Almeida S. (2003) " Zerg: a very fast BLAST parser library ". Bioinformatics, 19:1035-1036.

5) Camargo A. A., Samaia H. P. B., Dias-Neto E., Simão D. F., Migotto I. A., Briones M. R. S., Costa F. F., Nagai M. A., Verjovski-Almeida S., Zago M. A., Andrade L. E. C., Carrer H., El-Dorry H. F. A., Espreafico E. M., Habr-Gama A., Giannella-Neto D., Goldman G. H., A. Gruber, C. Hackel, Kimura E.T., Maciel R. M. B., Marie S. K. N., Martins E. A. L., Nóbrega M. P., Paço-Larson M. L., Pardini M. I. M. C., Pereira G. G. , Pesquero J. B., Rodrigues V., Rogatto S. R. ,da Silva I. D. C. G., Sogayar M. C., Sonati M. F., Tajara E. H., Valentini S. R., Alberto F. L., Amaral M. E. J., Aneas I., Arnaldi L. A. T.,de Assis A. M., Bengtson M. H., Bergamo N. A., Bombonato V., de Camargo M. E. R., Canevari R. A., Carraro D. M., Cerutti J. M., Corrêa M. L. C., Corrêa R. F. R., Costa M. C. R., Curcio C., Hokama P. O. M., Ferreira A. J. S., Furuzawa G. K., Gushiken T., Ho P. L., Kimura E., Krieger J. E., Leite L. C. C., Majumder P., Marins M., Marques E. R., Melo A. S. A., Melo M., Mestriner C. A., Miracca E. C., Miranda D. C., Nascimento A. L. T. O., Nóbrega F. G., Ojopi E. P. B., Pandolfi J. R. C., Pessoa L. G., Prevedel A. C., Rahal P., Rainho C. A., Reis E. M. R., Ribeiro M. L., da Rós N., de Sá R. G., Sales M. M., Sant'anna S. C., dos Santos M. L., da Silva A. M.,da Silva N. P., Silva Jr. W. A., da Silveira , R. A., Sousa J. F., Stecconi D., Tsukumo F., Valente V., Soares F., Moreira E. S., Nunes D. N., Correa R. G., Zalcberg H., Carvalho A. F., Reis L. F. L., Brentani R. R., Simpson A. J. G. and de Souza S. J. (2001) " The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome ". Proc. Natl. Acad. Sci. USA, 98:12103-12108.

4) Reis E. M. R., Kurtenbach E., Ferreira A.R., Biselli, P.J.C., Slayman C. W. and Verjovski-Almeida S.(1999) " N-terminal chimeric constructs improve the expression of sarcoplasmic reticulum Ca 2+-ATPase in yeast ". Biochimica et Biophysica Acta, 1461:83-95.

3) Costa V., Amorim M.A., Reis E., Quintanilha A. and Moradas-Ferreira P. (1997) " Mitochondrial superoxide dismutase is essential for ethanol tolerance of Saccharomyces cerevisiae in the post-diauxic phase". Microbiology, 143:1649-1656.

2) Reis E.M.R., Slayman C. W. and Verjovski-Almeida S. (1996) " Heterologous expression of sarcoplasmic reticulum Ca2+ -ATPase" Bioscience Reports, 16: 107-113.

1) Costa V.; Reis E., Quintanilha A. and Moradas Ferreira P. (1993) "Acquisition of ethanol tolerance in Saccharomyces cerevisiae - the key role of mitochondrial superoxide dismutase". Archives of Biochemistry and Biophysics, 300:608-614.


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